Libraries and Sequences Database
An infrastructure for the tracking and processing of libraries and sequences produced by the Centre National de Sequencage (CNS) has been set up. The data of the CBiB Library Database and the CBiB Sequence Analysis Interface have been transferred to the eLab.
Sequences produced by the CNS were automatically collected and processed on the CBiB server. The processing of the sequences covered: clustering of ESTs, the detection of SNPs and SSRs, and the semi-automatic annotation of ESTs and clusters.
Species Library Tissue Sequences Abies alba cDNA library Needles 4,591 Fagus sylvatica cDNA library bud 39,213 Fagus sylvatica cDNA library dormant buds 30,107 Fagus sylvatica Chloroplast genome library leaves 914 Fraxinus excelsior cDNA library buds 27,998 Lymantria dispar cDNA library Gut & Rest of Body 18,508 Lymantria monacha cDNA library Gut & Rest of Body 16,695 Picea abies Gene enriched genomic library Needle 3,028 Picea abies Gene enriched genomic library Seed 3,035 Picea abies Genomic library whole seedling 4,288 Pinus pinaster Chloroplast genome library needles 2,219 Pinus pinaster Genomic library needles 8,344 Pinus pinaster SSH library Differentiating xylem 8,948 Pinus pinaster SSH library Differentiting xylem 2,229 Pinus sylvestris cDNA library needles 9,059 Pinus sylvestris cDNA library Young Needles 18,095 Podocarpus oleifolius SSR enriched library needles 1,809 Prunus avium cDNA library leaf bud 11,904 Quercus petraea cDNA library xylem 8,689 Quercus petraea cDNA library leaf 24,023 Quercus petraea cDNA library bud 9,804 Quercus petraea cDNA library roots 28,494 Quercus petraea SSH library roots 3,501 Quercus robur BAC library for BAC end sequencing leaves 14,974 Quercus robur cDNA library bud 33,877 Quercus robur cDNA library roots 8,859 Quercus robur cDNA library buds 19,048 Quercus robur Chloroplast genome library leaves 2,138 Quercus robur Gene enriched genomic library Etiolated leaf 9,054 Quercus robur Genomic library leaves 13,416 Quercus robur SSH library roots 4,403 Quercus robur SSH library leaves 3,575 Quercus suber cDNA library developing phellem 4,992 Tortrix viridana cDNA library midgut 18,174